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Align target sequence to selected transcript on protein level#79

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sallybg wants to merge 2 commits intomavedb-mainfrom
align-target-to-protein
Open

Align target sequence to selected transcript on protein level#79
sallybg wants to merge 2 commits intomavedb-mainfrom
align-target-to-protein

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@sallybg sallybg commented Mar 11, 2026

For protein-coding, non-reference variants, align protein-level target sequence to protein-level selected transcript sequence, and use alignment information to generate mappings. This handles within-sequence offsets between the target and selected transcript, which was not handled previously.

@sallybg sallybg requested a review from bencap March 11, 2026 17:38
@bencap bencap linked an issue Mar 11, 2026 that may be closed by this pull request
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Align target sequence to selected transcript at the protein level

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