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Write functions for forward and reverse transcription and translation between alleles

enhancementNew feature or requestNew feature or request

Status: Open.

#459 In GenomicMedLab/cool-seq-tool;

· jsstevenson opened on Mar 7, 2026

grch38_to_mane_c_p should validate input arguments

bugSomething isn't workingSomething isn't working

priority:lowLow priorityLow priority

Status: Open.

#457 In GenomicMedLab/cool-seq-tool;

· korikuzma opened on Feb 25, 2026

Ensure function documentation is descriptive for complex methods

documentationImprovements or additions to documentationImprovements or additions to documentation

priority:lowLow priorityLow priority

Status: Open.

#456 In GenomicMedLab/cool-seq-tool;

· jarbesfeld opened on Feb 24, 2026

align_mapper.p_to_g does not support split codons across exon junctions (e.g. BRAF N581S)

enhancementNew feature or requestNew feature or request

Status: Open.

#453 In GenomicMedLab/cool-seq-tool;

· Hui-zju opened on Jan 27, 2026

Add docker compose

enhancementNew feature or requestNew feature or request

priority:lowLow priorityLow priority

Status: Open.

#448 In GenomicMedLab/cool-seq-tool;

· jarbesfeld opened on Dec 29, 2025

Retry network requests on failure

bugSomething isn't workingSomething isn't working

Status: Open.

#444 In GenomicMedLab/cool-seq-tool;

· zealws opened on Nov 25, 2025

UTA Query for transcript is non-deterministic

bugSomething isn't workingSomething isn't working

priority:mediumMedium priorityMedium priority

Status: Open.

Bug

#435 In GenomicMedLab/cool-seq-tool;

· zealws opened on Oct 7, 2025

UTA database recreates schema on startup

bugSomething isn't workingSomething isn't working

priority:mediumMedium priorityMedium priority

Status: Open.

Bug

#430 In GenomicMedLab/cool-seq-tool;

· zealws opened on Sep 15, 2025

Liftover fails for GRCh37 variants where the strand differs from GRCh38

bugSomething isn't workingSomething isn't working

Status: Open.

#421 In GenomicMedLab/cool-seq-tool;

· jarbesfeld opened on Aug 15, 2025

Add information about Ensembl transcripts to docs

documentationImprovements or additions to documentationImprovements or additions to documentation

priority:lowLow priorityLow priority

Status: Open.

#342 In GenomicMedLab/cool-seq-tool;

· korikuzma opened on Jul 31, 2024

Add coordinate type to usage docs

documentationImprovements or additions to documentationImprovements or additions to documentation

priority:lowLow priorityLow priority

Status: Open.

#341 In GenomicMedLab/cool-seq-tool;

· korikuzma opened on Jul 31, 2024

Move pydantic models to their respective module

priority:lowLow priorityLow priority

technical debtA feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"

Status: Open.

#336 In GenomicMedLab/cool-seq-tool;

· korikuzma opened on Jul 31, 2024