diff --git a/.ci_support/environment-integration.yml b/.ci_support/environment-integration.yml
index 6bd3f529..b7ef0f69 100644
--- a/.ci_support/environment-integration.yml
+++ b/.ci_support/environment-integration.yml
@@ -4,7 +4,7 @@ dependencies:
 - h5py =3.15.1
 - jupyter
 - mpi4py =4.1.1
-- numpy =2.3.3
+- numpy =2.3.5
 - openmpi
 - papermill
 - atomistics =0.3.4
@@ -15,9 +15,9 @@ dependencies:
 - hatchling =1.28.0
 - hatch-vcs =0.5.0
 - ipython =9.9.0
-- matplotlib =3.10.6
+- matplotlib =3.10.8
 - networkx =3.6.1
 - pygraphviz =1.14
-- pysqa =0.3.3
+- pysqa =0.3.4
 - pyzmq =27.1.0
 - qe =7.5
diff --git a/.ci_support/environment-mini.yml b/.ci_support/environment-mini.yml
index 7e97c15b..cad68c27 100644
--- a/.ci_support/environment-mini.yml
+++ b/.ci_support/environment-mini.yml
@@ -2,7 +2,7 @@ channels:
 - conda-forge
 dependencies:
 - python
-- numpy =2.3.3
+- numpy =2.4.1
 - cloudpickle =3.1.0
 - hatchling =1.28.0
 - hatch-vcs =0.5.0
diff --git a/.ci_support/environment-mpich.yml b/.ci_support/environment-mpich.yml
index 1f72675c..79b4117b 100644
--- a/.ci_support/environment-mpich.yml
+++ b/.ci_support/environment-mpich.yml
@@ -2,7 +2,7 @@ channels:
 - conda-forge
 dependencies:
 - python
-- numpy =2.3.3
+- numpy =2.4.1
 - mpich
 - cloudpickle =3.1.2
 - h5py =3.15.1
@@ -12,5 +12,5 @@ dependencies:
 - mpi4py =4.1.1
 - networkx =3.6.1
 - pygraphviz =1.14
-- pysqa =0.3.3
+- pysqa =0.3.4
 - pyzmq =27.1.0
diff --git a/.ci_support/environment-openmpi.yml b/.ci_support/environment-openmpi.yml
index e72dca87..6061489e 100644
--- a/.ci_support/environment-openmpi.yml
+++ b/.ci_support/environment-openmpi.yml
@@ -2,7 +2,7 @@ channels:
 - conda-forge
 dependencies:
 - python
-- numpy =2.3.3
+- numpy =2.4.1
 - openmpi
 - cloudpickle =3.1.2
 - h5py =3.15.1
@@ -12,5 +12,5 @@ dependencies:
 - mpi4py =4.1.1
 - networkx =3.6.1
 - pygraphviz =1.14
-- pysqa =0.3.3
+- pysqa =0.3.4
 - pyzmq =27.1.0
diff --git a/.ci_support/environment-win.yml b/.ci_support/environment-win.yml
index 430ce4a7..b0b9fe82 100644
--- a/.ci_support/environment-win.yml
+++ b/.ci_support/environment-win.yml
@@ -2,7 +2,7 @@ channels:
 - conda-forge
 dependencies:
 - python
-- numpy =2.3.3
+- numpy =2.4.1
 - msmpi
 - cloudpickle =3.1.2
 - h5py =3.15.1
diff --git a/pyproject.toml b/pyproject.toml
index 55c5ae92..735b6759 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -52,12 +52,12 @@ graphnotebook = [
 ]
 mpi = ["mpi4py==4.1.1"]
 cluster = [
-    "pysqa==0.3.3",
+    "pysqa==0.3.4",
     "h5py==3.15.1",
 ]
 all = [
     "mpi4py==4.1.1",
-    "pysqa==0.3.3",
+    "pysqa==0.3.4",
     "h5py==3.15.1",
     "pygraphviz==1.14",
     "networkx==3.6.1",