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metadata.json
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1362 lines (1361 loc) · 44.6 KB
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{
"pathology": {
"groupings": [
{
"level": "table",
"order": "alpha",
"orientation": "horizontal"
},
{
"level": "recordKey",
"order": "alpha",
"orientation": "horizontal"
},
{
"level": "field",
"order": "alpha",
"orientation": "horizontal"
}
],
"tables":[
{"table":"Pathology",
"fields":[
{"field":"PathHistology",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["lung"],
"values":["Adenocarcinoma","Adenosquamous Carcinoma","Bronchioloalveolar Carcinoma","Large Cell Carcinoma","Non Small Cell Carcinoma","Small Cell Carcinoma","Squamous Cell Carcinoma","Lymphoepithelial Carcinoma","Neuroendocrine Carcinoma"]
},
{"diseaseGroup":["*"],
"values":["Carcinoma, NOS","Cancer","Sarcoma"]
},
{"diseaseGroup":["brain"],
"values":["Anaplastic Astrocytoma","Anaplastic Ependymoma","Anaplastic Ganglioglioma","Anaplastic Meningioma","Anaplastic Oligoastrocytoma","Anaplastic Oligodendroglioma","Astroblastoma","Astrocytoma","Atypical Meningioma","Central Neurocytoma","Chondrosarcoma","Chordoid Meningioma","Chordoma","Craniopharyngioma","Dysembryoplastic Neuroepithelial Tumor (DNET)","Ependymoma","Esthesioneuroblastoma","Ganglioglioma","Glioblastoma","Glioma","Gliosarcoma","Hemangioblastoma","Hemangiopericytoma","Meningioma","Medulloblastoma","Neurofibroma","Neuroblastoma","Oligoastrocytoma","Oligodendroglioma","Papillary Glioneuronal Tumor","Pilocytic Astrocytoma","Pituitary Adenoma","Pleomorphic Xanthoastrocytoma","Primitive Neuroectodermal Tumor (PNET)","Schwannoma","Small Cell Glioblastoma","Subependymoma","Undifferentiated Neuroepithelial Tumor"]
},
{"diseaseGroup":["breast"],
"values":["Adenocarcinoma","Ductal Carcinoma","Invasive Lobular Carcinoma"]
},
{"diseaseGroup":["GI"],
"values":["Adenocarcinoma","Squamous Cell Carcinoma"]
},
{"diseaseGroup":["GU"],
"values":["Adenocarcinoma","Squamous Cell Carcinoma","Urothelial Carcinoma"]
},
{"diseaseGroup":["gyn"],
"values":["Adenocarcinoma","Squamous Cell Carcinoma","Neuroendocrine Carcinoma"]
},
{"diseaseGroup":["head_neck"],
"values":["Adenocarcinoma","Basaloid Squamous Cell Carcinoma","Squamous Cell Carcinoma","Non-Small Cell Carcinoma","Small Cell Carcinoma","Salivary Gland Carcinoma"]
},
{"diseaseGroup":["heme"],
"values":["AML","CML","MM","MDS","CCL","Lymphoma","Leukemia"]
},
{"diseaseGroup":["other"],
"values":[]
},
{"diseaseGroup":["sarcoma"],
"values":["Alveolar Soft Part Sarcoma", "Angiosarcoma", "Chondrosarcoma", "Clear Cell Sarcoma", "Dendritic Cell Tumor", "Dermatofibrosarcoma Protuberans", "Desmoplastic Small Round Cell Tumor", "Dysplastic Gangliocytoma of the Cerebellem (Lhermitte-Duclos Disease)", "Epithelioid Sarcoma", "Ewing Sarcoma", "Fibrosarcoma", "Ganglioneuroma", "GIST", "Hemangioblastoma", "Hemangiopericytomal", "Leiomyoma", "Leiomyosarcoma", "Lipoma", "Liposarcoma", "Malignant Peripheral Nerve Sheath Tumor", "Malignant Solitary Fibrous Tumor", "Myofibroblastoma", "Myofibrosarcoma", "Myxofibrosarcoma", "Myxoma", "Osteochondroma", "Osteosarcoma", "Rhabdomyosarcoma", "Round Blue Cell Sarcoma", "Sarcoma", "Smooth Muscle Tumor of Uncertain Malignant Potential (STUMP)", "Solitary Fibrous Tumor", "Synovial Sarcoma", "Undifferentiated Pleomorphic Sarcoma"]
},
{"diseaseGroup":["skin"],
"values":["Melanoma","Basal Cell Carcinoma","Merkel Cell Carcinoma","Squamous Cell Carcinoma"]
}
]
},
{"field":"PathHistology2",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["lung"],
"values":["Adenocarcinoma","Adenosquamous Carcinoma","Bronchioloalveolar Carcinoma","Large Cell Carcinoma","Non Small Cell Carcinoma","Small Cell Carcinoma","Squamous Cell Carcinoma","Lymphoepithelial Carcinoma","Neuroendocrine Carcinoma"]
},
{"diseaseGroup":["*"],
"values":["Carcinoma, NOS","Cancer","Sarcoma"]
},
{"diseaseGroup":["brain"],
"values":["Anaplastic Astrocytoma","Anaplastic Ependymoma","Anaplastic Ganglioglioma","Anaplastic Meningioma","Anaplastic Oligoastrocytoma","Anaplastic Oligodendroglioma","Astroblastoma","Astrocytoma","Atypical Meningioma","Central Neurocytoma","Chondrosarcoma","Chordoid Meningioma","Chordoma","Craniopharyngioma","Dysembryoplastic Neuroepithelial Tumor (DNET)","Ependymoma","Esthesioneuroblastoma","Ganglioglioma","Glioblastoma","Glioma","Gliosarcoma","Hemangioblastoma","Hemangiopericytoma","Meningioma","Medulloblastoma","Neurofibroma","Neuroblastoma","Oligoastrocytoma","Oligodendroglioma","Papillary Glioneuronal Tumor","Pilocytic Astrocytoma","Pituitary Adenoma","Pleomorphic Xanthoastrocytoma","Primitive Neuroectodermal Tumor (PNET)","Schwannoma","Small Cell Glioblastoma","Subependymoma","Undifferentiated Neuroepithelial Tumor"]
},
{"diseaseGroup":["breast"],
"values":["Adenocarcinoma","Ductal Carcinoma","Invasive Lobular Carcinoma"]
},
{"diseaseGroup":["GI"],
"values":["Adenocarcinoma","Squamous Cell Carcinoma"]
},
{"diseaseGroup":["GU"],
"values":["Adenocarcinoma","Squamous Cell Carcinoma","Urothelial Carcinoma"]
},
{"diseaseGroup":["gyn"],
"values":["Adenocarcinoma","Squamous Cell Carcinoma","Neuroendocrine Carcinoma"]
},
{"diseaseGroup":["head_neck"],
"values":["Adenocarcinoma","Basaloid Squamous Cell Carcinoma","Squamous Cell Carcinoma","Non-Small Cell Carcinoma","Small Cell Carcinoma","Salivary Gland Carcinoma"]
},
{"diseaseGroup":["heme"],
"values":["AML","CML","MM","MDS","CCL","Lymphoma","Leukemia"]
},
{"diseaseGroup":["other"],
"values":[]
},
{"diseaseGroup":["sarcoma"],
"values":["Alveolar Soft Part Sarcoma", "Angiosarcoma", "Chondrosarcoma", "Clear Cell Sarcoma", "Dendritic Cell Tumor", "Dermatofibrosarcoma Protuberans", "Desmoplastic Small Round Cell Tumor", "Dysplastic Gangliocytoma of the Cerebellem (Lhermitte-Duclos Disease)", "Epithelioid Sarcoma", "Ewing Sarcoma", "Fibrosarcoma", "Ganglioneuroma", "GIST", "Hemangioblastoma", "Hemangiopericytomal", "Leiomyoma", "Leiomyosarcoma", "Lipoma", "Liposarcoma", "Malignant Peripheral Nerve Sheath Tumor", "Malignant Solitary Fibrous Tumor", "Myofibroblastoma", "Myofibrosarcoma", "Myxofibrosarcoma", "Myxoma", "Osteochondroma", "Osteosarcoma", "Rhabdomyosarcoma", "Round Blue Cell Sarcoma", "Sarcoma", "Smooth Muscle Tumor of Uncertain Malignant Potential (STUMP)", "Solitary Fibrous Tumor", "Synovial Sarcoma", "Undifferentiated Pleomorphic Sarcoma"]
},
{"diseaseGroup":["skin"],
"values":["Melanoma","Basal Cell Carcinoma","Merkel Cell Carcinoma","Squamous Cell Carcinoma"]
}
]
},
{"field":"PathSpecimenType",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["Brushing","Washing","Biopsy","Core Needle Biopsy","Wedge Biopsy","Wedge Resection","Exisional Biopsy","Punch Biopsy","Shave Biopsy","Lavage","Dissection","Lymph Node Dissection","Fine Needle Aspirate","Excision","Resection","Port Placement","Tube Placement","Drain Placement","Catheter Placement"]
},
{"diseaseGroup":["brain"],
"values":["Craniotomy","Neuroendoscopy"]
},
{"diseaseGroup":["breast"],
"values":["Mastectomy","Radical Mastectomy","Lumpectomy","Stereotactic Biopsy","Ultrasound Guided Biopsy","Excisional Biopsy"]
},
{"diseaseGroup":["GI"],
"values":["Cholecystectomy","Pancreaticoduodenectomy","Omentectomy","Hemicolectomy","Segmental Resection","Appendectomy","Polypectomy"]
},
{"diseaseGroup":["GU"],
"values":["Prostatectomy","Radical Prostatectomy","Cystectomy","Orchiectomy"]
},
{"diseaseGroup":["gyn"],
"values":["Hysterectomy","Salpingo-Oopherectomy","Radical Hysterectomy","Externeration"]
},
{"diseaseGroup":["head_neck"],
"values":["Neck Dissection","Hemiglossectomy","Maxillectomy","Mandibulectomy","Hemithyroidectomy","Thyroidectomy","Glossectomy","Laryngopharyngectomy","Laryngectomy","Adrenalectomy","Tonsillectomy","Parotidectomy","Rhinectomy"]
},
{"diseaseGroup":["heme"],
"values":[""]
},
{"diseaseGroup":["lung"],
"values":["Alveolectomy","Bronchoscopy","Thoracentesis","Cystoscopy","Endoscopy","Laminectomy","Foraminotomy","Facetectomy;facetomies","Fusion","Ligation","Lobectomy","Lymphadenectomy","Lysis Carotid Artery","Mediastinoscopy","Paracentesis","Pericardiocentesis","Pneumonectomy","Thoracentesis","Thoracoscopy","Thoracostomy","Thoracotomy","Pleurectomy"]
},
{"diseaseGroup":["other"],
"values":[]
},
{"diseaseGroup":["sarcoma"],
"values":[]
},
{"diseaseGroup":["skin"],
"values":["Shave Biopsy","Punch Biopsy"]
}
]
},
{"field":"PathQuality",
"datatype":"string",
"closedClass":"True",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["OUT","STD","REV"]
}
]
},
{"field":"Behavior",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["Malignant","In Situ","Invasive"]
}
]
},
{"field":"OtherFinding",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["Adenoma", "Ascites", "Atypical Cells", "Cyst", "Dysplasia", "Fibroma", "Fibrosis", "Granuloma", "Hyperplasia", "Inflammation", "Lipoma", "Metaplasia", "Mucinous", "Necrosis", "Polyp", "Treatment Effect"]
},
{"diseaseGroup":["breast"],
"values":["Atypia", "Lobular Carcinoma In Situ", "Atypical Ductal Hyperplasia", "Atypical Lobular Hyperplasia", "Papilloma", "Radial Scar", "Complex Sclerosing Lesion", "Flat Epithelial Atypia", "Phyllodes", "Atypical Apocrine Metaplasia"]
},
{"diseaseGroup":["sarcoma"],
"values":["Arterio-Venous Malformation", "Benign Vascular Proliferation", "Chondroma", "Chordoma", "Enchondroma", "Epidermoid Cyst", "Fibroma of Tendon Sheath", "Follicular Hyperplasia", "Giant Cell Granuloma", "Giant Cell Tumor Bone", "Hemangioma", "Hibernoma", "Leiomyoma", "Lipoma", "Myofibroblastoma", "Myolipoma", "Myxoma", "Neurofibroma", "Osteochondroma", "Perineruioma", "Schwannoma", "Solitary Fibrous Tumor"]
}
]
},
{"field":"Metastasis",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["metastatic"]
}
]
},
{"field":"PathGrade",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["high grade","low grade","intermediate grade","poorly differentiated","moderately differentiated","well differentiated"]
}
]
},
{"field":"PathSite",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["Abdomen","Acetabulum","Adrenal","Ampulla","Anal","Arm", "Back","Bile Duct","Bladder","Bone","Bowel","Brain and CNS", "Breast","Cervix","Chest","Colorectal","Diaphragm","Endometrium", "Esophagus","Head and Neck","Heart","Kidney","Leg","Liver", "Lung", "Lymph Node","Ovary","Pancreas","Pelvis","Penis","Prostate", "Sacrum","Skin","Spine","Spleen","Stomach","Testis","Tonsil", "Torso","Urine","Uterus","Vagina","Vulva"]
},
{"diseaseGroup":["brain"],
"values":["Cerebellar","Fossa","Frontal Lobe","Frontoparietal Lobe","Frontotemporal Lobe","Frontotemporoparietal Lobe","Occipital Lobe","Occipitoparietal Lobe","Occipitotemporal Lobe","Paraspinal","Parietal Lobe","Parietooccipital Lobe","Sellar","Skull","Spine","Suboccipital Lobe","Subtemporal Lobe","Temporooccipital Lobe","Temporoparietal Lobe","Temporal Lobe","Thalamus","Middle Lobe","Lower Lobe","Parietal","Cerebellopontine","Pineal Gland"]
},
{"diseaseGroup":["breast"],
"values":["1 O'clock","1:30 O'clock","2 O'clock","2:30 O'clock","3:30 O'clock","3 O'clock","4:30 O'clock","4 O'clock","5 O'clock","5:30 O'clock","6 O'clock","6:30 O'clock","7 O'clock","7:30 O'clock","8 O'clock","8:30 O'clock","9 O'clock","9:30 O'clock","10 O'clock","10:30 O'clock","11 O'clock","11:30 O'clock","12 O'clock","12:30 O'clock","LIQ","LOQ","UIQ","UOQ","Nipple","Axillary Tail"]
},
{"diseaseGroup":["GI"],
"values":["Gallbladder","Stomach","Rectum","Colon","Colorectal","Sigmoid Colon","Pancreas","Omentum","Ileum","Transverse Colon","Ascending Colon","Descending Colon","Cecum","Antrum","Rectosigmoid Colon","Appendix","Esophagus","Intestine","Duodenum","Bowel"]
},
{"diseaseGroup":["GU"],
"values":["Bladder","Prostate","Penis","Testicle"]
},
{"diseaseGroup":["gyn"],
"values":["Cervix","Uterus","Ovary","Vagina","Vulva","Fallopian","Pelvis","Edometrium"]
},
{"diseaseGroup":["head_neck"],
"values":["Alveolar","Buccal ","Chin","Epiglottis","False Vocal Cord","Gingiva","Hypopharynx","Jugular","Larynx","Lip","Mandible","Maxilla","Maxillary Sinus","Mouth","Nasal","Neck","Nose","Oropharynx","Palate","Paratracheal","Pharynx","Salivary Gland","Sinus","Subglottis","Sublingual","Submandibular","Supraglottis","Skull","Tongue","Tonsil","Tooth","Trachea","Vocal Cord"]
},
{"diseaseGroup":["heme"],
"values":["Marrow","Peripheral"]
},
{"diseaseGroup":["lung"],
"values":["Upper Lobe","Mediastinum","Hilar","Interlobular","Lower Lobe","Middle Lobe","Middle/Lower Lobe","Bronchus","Pleura","Retroperitoneum","Upper/Middle Lobe","Lymph Node","Chest Wall"]
},
{"diseaseGroup":["other"],
"values":[]
},
{"diseaseGroup":["sarcoma"],
"values":["Lower Extremity","Upper Extremity","Pelvis","Abdomen","Torso","Spine","Retroperitoneal","Neck","Head","Lung","Heart","Peritoneum","Liver","Kidney","Diaphragm"]
},
{"diseaseGroup":["skin"],
"values":["Face","Neck","Arm","Leg","Torso","Foot","Hand"]
}
]
},
{"field":"PathSubsite",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["Anterior","Base","Central","Deep","Lateral","Superior","Posterior","Distal","Margin","Lower","Upper","Medial","Inferior","Proximal"]
},
{"diseaseGroup":["head_neck"],
"values":["Level I","Level II","Level III","Level IV","Level V"]
},
{"diseaseGroup":["skin"],
"values":["Nevus","Lentigo","Scar"]
}
]
},
{"field":"PathSide",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["Right","Left","Bilateral","Midline"]
},
{"diseaseGroup":["head_neck"],
"values":["Right","Left","Bilateral","Midline","Ipsilateral"]
}
]
},
{"field":"PathSignedDate",
"datatype":"date",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"PathCollectedDate",
"datatype":"date",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"PathReceivedDate",
"datatype":"date",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"Pathologist",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
}
]
},
{"table":"PathologyStageGrade",
"fields":[
{"field":"PathStageT",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["Tis","T1","T1a","T1b","T1c","T2","T2a","T2b","T2c","T3","T3a","T3b","T3c","T4","T4a","T4b","T4c","TX"]
}
]
},
{"field":"PathStageN",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["N0","N1","N1a","N1b","N1c","N2","N2a","N2b","N2c","N3","N3a","N3b","N3c","N4","N4a","N4b","N4c","NX"]
}
]
},
{"field":"PathStageSystem",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["AJCC 8", "AJCC 7", "AJCC 6"]
}
]
},
{"field":"PathStageGroup",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"PathStageM",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["M0","M1","M1a","M1b","M1c","M2","M2a","M2b","M2c","MX"]
}
]
},
{"field":"PathStageDisease",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["brain","breast","head_neck","heme","lung","GU","GI","sarcoma","gyn","other","skin"]
}
]
}
]
},
{"table":"EngineReportInfo",
"fields":[
{"field":"ClassifiedDiseaseGroup",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["brain","breast","GI","GU","gyn","heme","lung","sarcoma", "skin","other","head_neck"]
}
]
}
]
},
{"table":"PathologyFinding",
"fields":[
{"field":"PathSpecimenType",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["Brushing","Washing","Biopsy","Core Needle Biopsy","Wedge Biopsy","Wedge Resection","Exisional Biopsy","Punch Biopsy","Shave Biopsy","Lavage","Dissection","Lymph Node Dissection","Fine Needle Aspirate","Excision","Resection","Port Placement","Tube Placement","Drain Placement","Catheter Placement"]
},
{"diseaseGroup":["brain"],
"values":["Craniotomy","Neuroendoscopy"]
},
{"diseaseGroup":["breast"],
"values":["Mastectomy","Radical Mastectomy","Lumpectomy","Stereotactic Biopsy","Ultrasound Guided Biopsy","Excisional Biopsy"]
},
{"diseaseGroup":["GI"],
"values":["Cholecystectomy","Pancreaticoduodenectomy","Omentectomy","Hemicolectomy","Segmental Resection","Appendectomy","Polypectomy"]
},
{"diseaseGroup":["GU"],
"values":["Prostatectomy","Radical Prostatectomy","Cystectomy","Orchiectomy"]
},
{"diseaseGroup":["gyn"],
"values":["Hysterectomy","Salpingo-Oopherectomy","Radical Hysterectomy","Externeration"]
},
{"diseaseGroup":["head_neck"],
"values":["Neck Dissection","Hemiglossectomy","Maxillectomy","Mandibulectomy","Hemithyroidectomy","Thyroidectomy","Glossectomy","Laryngopharyngectomy","Laryngectomy","Adrenalectomy","Tonsillectomy","Parotidectomy","Rhinectomy"]
},
{"diseaseGroup":["heme"],
"values":[""]
},
{"diseaseGroup":["lung"],
"values":["Alveolectomy","Bronchoscopy","Thoracentesis","Cystoscopy","Endoscopy","Laminectomy","Foraminotomy","Facetectomy;facetomies","Fusion","Ligation","Lobectomy","Lymphadenectomy","Lysis Carotid Artery","Mediastinoscopy","Paracentesis","Pericardiocentesis","Pneumonectomy","Thoracentesis","Thoracoscopy","Thoracostomy","Thoracotomy","Pleurectomy"]
},
{"diseaseGroup":["other"],
"values":[]
},
{"diseaseGroup":["sarcoma"],
"values":[]
},
{"diseaseGroup":["skin"],
"values":["Shave Biopsy","Punch Biopsy"]
}
]
},
{"field":"PathSite",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["Abdomen","Acetabulum","Adrenal","Ampulla","Anal","Arm", "Back","Bile Duct","Bladder","Bone","Bowel","Brain and CNS", "Breast","Cervix","Chest","Colorectal","Diaphragm","Endometrium", "Esophagus","Head and Neck","Heart","Kidney","Leg","Liver", "Lung", "Lymph Node","Ovary","Pancreas","Pelvis","Penis","Prostate", "Sacrum","Skin","Spine","Spleen","Stomach","Testis","Tonsil", "Torso","Urine","Uterus","Vagina","Vulva"]
},
{"diseaseGroup":["brain"],
"values":["Cerebellar","Fossa","Frontal Lobe","Frontoparietal Lobe","Frontotemporal Lobe","Frontotemporoparietal Lobe","Occipital Lobe","Occipitoparietal Lobe","Occipitotemporal Lobe","Paraspinal","Parietal Lobe","Parietooccipital Lobe","Sellar","Skull","Spine","Suboccipital Lobe","Subtemporal Lobe","Temporooccipital Lobe","Temporoparietal Lobe","Temporal Lobe","Thalamus","Middle Lobe","Lower Lobe","Parietal","Cerebellopontine","Pineal Gland"]
},
{"diseaseGroup":["breast"],
"values":["1 O'clock","1:30 O'clock","2 O'clock","2:30 O'clock","3:30 O'clock","3 O'clock","4:30 O'clock","4 O'clock","5 O'clock","5:30 O'clock","6 O'clock","6:30 O'clock","7 O'clock","7:30 O'clock","8 O'clock","8:30 O'clock","9 O'clock","9:30 O'clock","10 O'clock","10:30 O'clock","11 O'clock","11:30 O'clock","12 O'clock","12:30 O'clock","LIQ","LOQ","UIQ","UOQ","Nipple","Axillary Tail"]
},
{"diseaseGroup":["GI"],
"values":["Gallbladder","Stomach","Rectum","Colon","Colorectal","Sigmoid Colon","Pancreas","Omentum","Ileum","Transverse Colon","Ascending Colon","Descending Colon","Cecum","Antrum","Rectosigmoid Colon","Appendix","Esophagus","Intestine","Duodenum","Bowel"]
},
{"diseaseGroup":["GU"],
"values":["Bladder","Prostate","Penis","Testicle"]
},
{"diseaseGroup":["gyn"],
"values":["Cervix","Uterus","Ovary","Vagina","Vulva","Fallopian","Pelvis","Edometrium"]
},
{"diseaseGroup":["head_neck"],
"values":["Alveolar","Buccal ","Chin","Epiglottis","False Vocal Cord","Gingiva","Hypopharynx","Jugular","Larynx","Lip","Mandible","Maxilla","Maxillary Sinus","Mouth","Nasal","Neck","Nose","Oropharynx","Palate","Paratracheal","Pharynx","Salivary Gland","Sinus","Subglottis","Sublingual","Submandibular","Supraglottis","Skull","Tongue","Tonsil","Tooth","Trachea","Vocal Cord"]
},
{"diseaseGroup":["heme"],
"values":["Marrow","Peripheral"]
},
{"diseaseGroup":["lung"],
"values":["Upper Lobe","Mediastinum","Hilar","Interlobular","Lower Lobe","Middle Lobe","Middle/Lower Lobe","Bronchus","Pleura","Retroperitoneum","Upper/Middle Lobe","Lymph Node","Chest Wall"]
},
{"diseaseGroup":["other"],
"values":[]
},
{"diseaseGroup":["sarcoma"],
"values":["Lower Extremity","Upper Extremity","Pelvis","Abdomen","Torso","Spine","Retroperitoneal","Neck","Head","Lung","Heart","Peritoneum","Liver","Kidney","Diaphragm"]
},
{"diseaseGroup":["skin"],
"values":["Face","Neck","Arm","Leg","Torso","Foot","Hand"]
}
]
},
{"field":"Behavior",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["Malignant","In Situ","Invasive","Benign"]
}
]
},
{"field":"OtherFinding",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["Adenoma", "Ascites", "Atypical Cells", "Cyst", "Dysplasia", "Fibroma", "Fibrosis", "Granuloma", "Hyperplasia", "Inflammation", "Lipoma", "Metaplasia", "Mucinous", "Necrosis", "Polyp", "Treatment Effect"]
},
{"diseaseGroup":["sarcoma"],
"values":["Arterio-Venous Malformation", "Benign Vascular Proliferation", "Chondroma", "Chordoma", "Enchondroma", "Epidermoid Cyst", "Fibroma of Tendon Sheath", "Follicular Hyperplasia", "Giant Cell Granuloma", "Giant Cell Tumor Bone", "Hemangioma", "Hibernoma", "Leiomyoma", "Lipoma", "Myofibroblastoma", "Myolipoma", "Myxoma", "Neurofibroma", "Osteochondroma", "Perineruioma", "Schwannoma", "Solitary Fibrous Tumor"]
}
]
},
{"field":"PathFindSide",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["Right","Left","Bilateral","Midline"]
},
{"diseaseGroup":["head_neck"],
"values":["Right","Left","Bilateral","Midline","Ipsilateral"]
}
]
},
{"field":"PathFindHeight",
"datatype":"float",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"PathFindWidth",
"datatype":"float",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"PathFindLength",
"datatype":"float",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"PathGrade",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["high grade","low grade","intermediate grade","poorly differentiated","moderately differentiated","well differentiated"]
}
]
},
{"field":"Metastasis",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["metastatic"]
}
]
},
{"field":"PathFindHistology",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["lung"],
"values":["Adenocarcinoma","Adenosquamous Carcinoma","Bronchioloalveolar Carcinoma","Large Cell Carcinoma","Non Small Cell Carcinoma","Small Cell Carcinoma","Squamous Cell Carcinoma","Lymphoepithelial Carcinoma","Neuroendocrine Carcinoma"]
},
{"diseaseGroup":["*"],
"values":["Carcinoma, NOS","Cancer","Sarcoma"]
},
{"diseaseGroup":["brain"],
"values":["Anaplastic Astrocytoma","Anaplastic Ependymoma","Anaplastic Ganglioglioma","Anaplastic Meningioma","Anaplastic Oligoastrocytoma","Anaplastic Oligodendroglioma","Astroblastoma","Astrocytoma","Atypical Meningioma","Central Neurocytoma","Chondrosarcoma","Chordoid Meningioma","Chordoma","Craniopharyngioma","Dysembryoplastic Neuroepithelial Tumor (DNET)","Ependymoma","Esthesioneuroblastoma","Ganglioglioma","Glioblastoma","Glioma","Gliosarcoma","Hemangioblastoma","Hemangiopericytoma","Meningioma","Medulloblastoma","Neurofibroma","Neuroblastoma","Oligoastrocytoma","Oligodendroglioma","Papillary Glioneuronal Tumor","Pilocytic Astrocytoma","Pituitary Adenoma","Pleomorphic Xanthoastrocytoma","Primitive Neuroectodermal Tumor (PNET)","Schwannoma","Small Cell Glioblastoma","Subependymoma","Undifferentiated Neuroepithelial Tumor"]
},
{"diseaseGroup":["breast"],
"values":["Adenocarcinoma","Ductal Carcinoma","Lobular Carcinoma"]
},
{"diseaseGroup":["GI"],
"values":["Adenocarcinoma","Squamous Cell Carcinoma"]
},
{"diseaseGroup":["GU"],
"values":["Adenocarcinoma","Squamous Cell Carcinoma","Urothelial Carcinoma"]
},
{"diseaseGroup":["gyn"],
"values":["Adenocarcinoma","Squamous Cell Carcinoma","Neuroendocrine Carcinoma"]
},
{"diseaseGroup":["head_neck"],
"values":["Adenocarcinoma","Basaloid Squamous Cell Carcinoma","Squamous Cell Carcinoma","Non-Small Cell Carcinoma","Small Cell Carcinoma","Salivary Gland Carcinoma"]
},
{"diseaseGroup":["heme"],
"values":["AML","CML","MM","MDS","CCL","Lymphoma","Leukemia"]
},
{"diseaseGroup":["other"],
"values":[]
},
{"diseaseGroup":["sarcoma"],
"values":["Alveolar Soft Part Sarcoma", "Angiosarcoma", "Chondrosarcoma", "Clear Cell Sarcoma", "Dendritic Cell Tumor", "Dermatofibrosarcoma Protuberans", "Desmoplastic Small Round Cell Tumor", "Dysplastic Gangliocytoma of the Cerebellem (Lhermitte-Duclos Disease)", "Epithelioid Sarcoma", "Ewing Sarcoma", "Fibrosarcoma", "Ganglioneuroma", "GIST", "Hemangioblastoma", "Hemangiopericytomal", "Leiomyoma", "Leiomyosarcoma", "Lipoma", "Liposarcoma", "Malignant Peripheral Nerve Sheath Tumor", "Malignant Solitary Fibrous Tumor", "Myofibroblastoma", "Myofibrosarcoma", "Myxofibrosarcoma", "Myxoma", "Osteochondroma", "Osteosarcoma", "Rhabdomyosarcoma", "Round Blue Cell Sarcoma", "Sarcoma", "Smooth Muscle Tumor of Uncertain Malignant Potential (STUMP)", "Solitary Fibrous Tumor", "Synovial Sarcoma", "Undifferentiated Pleomorphic Sarcoma"]
},
{"diseaseGroup":["skin"],
"values":["Melanoma","Basal Cell Carcinoma","Merkel Cell Carcinoma","Squamous Cell Carcinoma"]
}
]
}
]
},
{"table":"NodePathFinding",
"fields":[
{"field":"PathFindSide",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["Right","Left","Bilateral","Midline","Ipsilateral"]
}
]
},
{"field":"PathFindSite",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"PathFindMaxDim",
"datatype":"float",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"PathFindExtension",
"datatype":"string",
"closedClass":"True",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["Yes","No"]
}
]
},
{"field":"PathFindPosNodes",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"PathFindNumNodes",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"PathFindHistology",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["lung"],
"values":["Adenocarcinoma","Adenosquamous Carcinoma","Bronchioloalveolar Carcinoma","Large Cell Carcinoma","Non Small Cell Carcinoma","Small Cell Carcinoma","Squamous Cell Carcinoma","Lymphoepithelial Carcinoma","Neuroendocrine Carcinoma"]
},
{"diseaseGroup":["*"],
"values":["Carcinoma, NOS","Cancer","Sarcoma"]
},
{"diseaseGroup":["brain"],
"values":["Anaplastic Astrocytoma","Anaplastic Ependymoma","Anaplastic Ganglioglioma","Anaplastic Meningioma","Anaplastic Oligoastrocytoma","Anaplastic Oligodendroglioma","Astroblastoma","Astrocytoma","Atypical Meningioma","Central Neurocytoma","Chondrosarcoma","Chordoid Meningioma","Chordoma","Craniopharyngioma","Dysembryoplastic Neuroepithelial Tumor (DNET)","Ependymoma","Esthesioneuroblastoma","Ganglioglioma","Glioblastoma","Glioma","Gliosarcoma","Hemangioblastoma","Hemangiopericytoma","Meningioma","Medulloblastoma","Neurofibroma","Neuroblastoma","Oligoastrocytoma","Oligodendroglioma","Papillary Glioneuronal Tumor","Pilocytic Astrocytoma","Pituitary Adenoma","Pleomorphic Xanthoastrocytoma","Primitive Neuroectodermal Tumor (PNET)","Schwannoma","Small Cell Glioblastoma","Subependymoma","Undifferentiated Neuroepithelial Tumor"]
},
{"diseaseGroup":["breast"],
"values":["Adenocarcinoma","Ductal Carcinoma","Lobular Carcinoma"]
},
{"diseaseGroup":["GI"],
"values":["Adenocarcinoma","Squamous Cell Carcinoma"]
},
{"diseaseGroup":["GU"],
"values":["Adenocarcinoma","Squamous Cell Carcinoma","Urothelial Carcinoma"]
},
{"diseaseGroup":["gyn"],
"values":["Adenocarcinoma","Squamous Cell Carcinoma","Neuroendocrine Carcinoma"]
},
{"diseaseGroup":["head_neck"],
"values":["Adenocarcinoma","Basaloid Squamous Cell Carcinoma","Squamous Cell Carcinoma","Non-Small Cell Carcinoma","Small Cell Carcinoma","Salivary Gland Carcinoma"]
},
{"diseaseGroup":["heme"],
"values":["AML","CML","MM","MDS","CCL","Lymphoma","Leukemia"]
},
{"diseaseGroup":["other"],
"values":[]
},
{"diseaseGroup":["sarcoma"],
"values":["Alveolar Soft Part Sarcoma", "Angiosarcoma", "Chondrosarcoma", "Clear Cell Sarcoma", "Dendritic Cell Tumor", "Dermatofibrosarcoma Protuberans", "Desmoplastic Small Round Cell Tumor", "Dysplastic Gangliocytoma of the Cerebellem (Lhermitte-Duclos Disease)", "Epithelioid Sarcoma", "Ewing Sarcoma", "Fibrosarcoma", "Ganglioneuroma", "GIST", "Hemangioblastoma", "Hemangiopericytomal", "Leiomyoma", "Leiomyosarcoma", "Lipoma", "Liposarcoma", "Malignant Peripheral Nerve Sheath Tumor", "Malignant Solitary Fibrous Tumor", "Myofibroblastoma", "Myofibrosarcoma", "Myxofibrosarcoma", "Myxoma", "Osteochondroma", "Osteosarcoma", "Rhabdomyosarcoma", "Round Blue Cell Sarcoma", "Sarcoma", "Smooth Muscle Tumor of Uncertain Malignant Potential (STUMP)", "Solitary Fibrous Tumor", "Synovial Sarcoma", "Undifferentiated Pleomorphic Sarcoma"]
},
{"diseaseGroup":["skin"],
"values":["Melanoma","Basal Cell Carcinoma","Merkel Cell Carcinoma","Squamous Cell Carcinoma"]
}
]
}
]
},
{"table":"PathTest",
"fields":[
{"field":"PathDate",
"datatype":"date",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"Her2FISH",
"datatype":"string",
"closedClass":"True",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["NO_HER2NEU","Positive","Negative","Equivocal","Hetergeneous","Insufficient"]
}
]
},
{"field":"Her2IHC",
"datatype":"string",
"closedClass":"True",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["NO_HER2NEU","Positive","Negative","Equivocal","Hetergeneous","Insufficient"]
}
]
},
{"field":"Nottingham",
"datatype":"string",
"closedClass":"True",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["NO_NOTTINGHAM","1","2","3"]
}
]
},
{"field":"Mitotic",
"datatype":"string",
"closedClass":"True",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["NO_MITOTIC","1","2","3"]
}
]
},
{"field":"PathNotes",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"PathQuality",
"datatype":"string",
"closedClass":"True",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":["OUT","STD","REV"]
}
]
}
]
}
]
},
"cytogenetics": {
"groupings": [
{
"level": "table",
"order": "alpha",
"orientation": "horizontal"
},
{
"level": "field",
"order": "alpha",
"orientation": "horizontal"
}
],
"tables":[
{"table":"Cytogenetics",
"fields":[
{
"field":"ReceivedDate",
"datatype":"date",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"KaryotypeString",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"AML_SWOG_RiskCategory",
"datatype":"string",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["heme"],
"values":["Favorable","Unfavorable","Miscellaneous","Intermediate","Insufficient"]
}
]
},
{"field":"DistinctMutations",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"Normal",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"DistinctMonosomies",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"Hyperploidy",
"datatype":"boolean",
"closedClass":"True",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[true, false]
}
]
},
{"field":"Hypoploidy",
"datatype":"boolean",
"closedClass":"True",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[true, false]
}
]
},
{"field":"Warning",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"DistinctTrisomies",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["*"],
"values":[]
}
]
},
{"field":"+8",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["heme"],
"values":[]
}
]
},
{"field":"20q",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["heme"],
"values":[]
}
]
},
{"field":"-13",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["heme"],
"values":[]
}
]
},
{"field":"del(13p)",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["heme"],
"values":[]
}
]
},
{"field":"del(13q)",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["heme"],
"values":[]
}
]
},
{"field":"t(16;20)",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["heme"],
"values":[]
}
]
},
{"field":"t(14;16)",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["heme"],
"values":[]
}
]
},
{"field":"t(4;14)",
"datatype":"integer",
"closedClass":"False",
"diseaseProperties":
[
{"diseaseGroup":["heme"],
"values":[]
}
]
},
{"field":"t(11;14)",