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e3e1160
added button
Feb 3, 2026
ae5e854
Merge commit 'ec1b6538eef23b4f0e61b8880ba94c54ab5d8549'
Feb 3, 2026
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52 changes: 46 additions & 6 deletions .github/workflows/ci.yml
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@@ -1,17 +1,19 @@
# This is a basic workflow to help you get started with MATLAB Actions
name: CI
name: MATLAB Build

# Controls when the action will run.
on:
# Triggers the workflow on pull request events, but only for the main branch
# Triggers the workflow on push or pull request events, but only for the main branch
push:
branches: [ main ]
pull_request:
branches: [ main ]

# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:

env:
PRODUCT_LIST: MATLAB MATLAB_Test SimBiology Statistics_and_Machine_Learning_Toolbox
PRODUCT_LIST: MATLAB MATLAB_Test

# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
permissions:
Expand All @@ -22,15 +24,20 @@ permissions:
# Only allow one build of this type to run at a time
# Ensure results publishing completes without being interrupted/overwritten
concurrency:
group: "test"
group: "test and publish results"
cancel-in-progress: false

jobs:
# This workflow contains a single job called "build"
build:

test:
# Set up URLs for GitHub Pages report
environment:
name: github-pages
url: ${{ steps.deployment.outputs.page_url }}

# The type of runner that the job will run on
runs-on: windows-latest
runs-on: ubuntu-latest

# Steps represent a sequence of tasks that will be executed as part of the job
steps:
Expand All @@ -50,3 +57,36 @@ jobs:
uses: matlab-actions/run-build@v2
with:
tasks: test

# Configure GitHub Pages to accept your artifact uploads
- name: Setup Pages
uses: actions/configure-pages@v5

# Upload testing and code coverage reports to your repository
- name: Upload pages
uses: actions/upload-pages-artifact@v4
with:
path: results # Upload results

# Publish reports to GitHub Pages so they can be viewed in a browser
- name: Deploy to GitHub Pages
id: deployment
uses: actions/deploy-pages@v4



# ==================================== #
# Alternate ways to run commands in CI #
# ==================================== #

## Runs your tests using `runtests` command
#- name: Run all tests
# uses: matlab-actions/run-tests@v2
# with:
# source-folder: code

## Executes custom MATLAB scripts, functions, or statements
#- name: Run custom testing procedure
# uses: matlab-actions/run-command@v2
# with:
# command: disp('Running my custom testing procedure!'); addpath('code'); results = runtests('IncludeSubfolders', true); assertSuccess(results);
99 changes: 0 additions & 99 deletions .github/workflows/deploy.yml
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8 changes: 5 additions & 3 deletions README.md
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@@ -1,15 +1,15 @@
[![MATLAB](https://github.com/ChezJe/MATLAB-SimBiology-DevOps-Workflow-Example/actions/workflows/ci.yml/badge.svg)](https://github.com/ChezJe/MATLAB-SimBiology-DevOps-Workflow-Example/actions/workflows/deploy.yml)
[![MATLAB](https://github.com/ChezJe/MATLAB-SimBiology-DevOps-Workflow-Example/actions/workflows/ci.yml/badge.svg)](https://github.com/ChezJe/MATLAB-SimBiology-DevOps-Workflow-Example/actions/workflows/ci.yml)
[![Tests](https://img.shields.io/badge/Tests-Open_Test_Report-blue)](https://ChezJe.github.io/MATLAB-SimBiology-DevOps-Workflow-Example/tests/)
[![Coverage](https://img.shields.io/badge/Coverage-Open_Code_Coverage_Report-orange)](https://ChezJe.github.io/MATLAB-SimBiology-DevOps-Workflow-Example/coverage/)

# MATLAB<sup>&reg;</sup>/SimBiology<sup>&reg;</sup> DevOps Workflow Example
# Generating Tests for Your MATLAB<sup>&reg;</sup> Code Workshop

This workshop provides hands-on experience using some of MATLAB's powerful software testing and automation features.
<br><br>

## About the workshop
This hands-on workshop will guide you through:
* forking your own copy of the "MATLAB-SimBiology-DevOps-Workflow-Example" repository on GitHub
* forking your own copy of the "Generating Tests for Your MATLAB Code Workshop" repository on GitHub
* generating tests using your command history and MATLAB Copilot
* automatically finding and running existing tests
* measuring and exploring code coverage metrics for your code
Expand All @@ -26,4 +26,6 @@ Step-by-step workshop instructions can be found in:
* [WorkshopGuide.m](WorkshopGuide.m)
<br><br>



Copyright 2025 The MathWorks, Inc.
7 changes: 4 additions & 3 deletions buildfile.m
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Expand Up @@ -7,6 +7,7 @@
% CodeIssues task
plan("check") = CodeIssuesTask(Results=["results/codeissues.sarif"; ...
"results/codeissues.mat"]);

% Test task
tTask = TestTask("tests", ...
SourceFiles = "code", ...
Expand All @@ -33,7 +34,7 @@
plan("generateSimFun").Inputs = fullfile(proj.RootFolder,"code","*.sbproj");
plan("generateSimFun").Outputs = fullfile(proj.RootFolder,"code","*.mat");
plan("test").Inputs = fullfile(proj.RootFolder,"code","*");
plan("compile").Inputs = fullfile(proj.RootFolder,"code",["*.mat","*.mlapp","*.m"]);
plan("compile").Inputs = fullfile(proj.RootFolder,"code",["*.mat","*.mlapp","graystyle.m"]);
plan("compile").Outputs = fullfile(proj.RootFolder,"WebAppArchive");

% Set default task
Expand Down Expand Up @@ -61,9 +62,9 @@ function compileTask(~)

MATfilename = dir(fullfile(rootFolder,"code","*.mat"));
MATfilename = fullfile(rootFolder,"code",MATfilename.name);
s = load(MATfilename,"dependenciesSimFun");
load(MATfilename,"dependenciesSimFun");

appDependencies = [MATfilename; s.dependenciesSimFun; ...
appDependencies = [MATfilename; dependenciesSimFun; ...
codeFiles; imgFiles];
appfilename = fullfile(rootFolder,"code","TMDDApp.mlapp");

Expand Down
20 changes: 7 additions & 13 deletions code/ConcTimecourseView.m
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Expand Up @@ -2,18 +2,15 @@

properties ( Access = private )
Model
Axes

ConcColors = [0.30,0.75,0.93;...
0.86,0.55,0.41;...
0.91,0.73,0.42]; % colors to plot concentrations
FontName = "Helvetica";
end

properties ( Hidden )
% Leave these properties Hidden but public to enable access for any test generated
% with Copilot during workshop
Axes

properties ( SetAccess=private, GetAccess={?tTMDDApp} )
% line handles
lhDrug
lhReceptor
Expand All @@ -38,16 +35,13 @@
xlabel(ax, "Time (hours)", 'FontName',obj.FontName);
ylabel(ax, "Concentrations (nanomole/liter)",'FontName',obj.FontName);

obj.lhDrug = plot(ax, NaN, NaN, '-','Linewidth',2,'Color',obj.ConcColors(1,:),'DisplayName','Drug');
obj.lhDrug = plot(ax, NaN, NaN, '-','Linewidth',2,'Color',obj.ConcColors(1,:));
hold(ax,'on');
obj.lhReceptor = plot(ax, NaN, NaN, '-','Linewidth',2,'Color',obj.ConcColors(2,:),'DisplayName','Receptor');
obj.lhComplex= plot(ax, NaN, NaN, '-','Linewidth',2,'Color',obj.ConcColors(3,:),'DisplayName','Complex');
obj.lhReceptor = plot(ax, NaN, NaN, '-','Linewidth',2,'Color',obj.ConcColors(2,:));
obj.lhComplex= plot(ax, NaN, NaN, '-','Linewidth',2,'Color',obj.ConcColors(3,:));
hold(ax,'off');
lgd = legend(ax,'show','FontName',obj.FontName,'Color','none');
lgd.Box = "off";

ax.XLimitMethod = "padded";
ax.YLimitMethod = "padded";
lh = legend(ax,{'Drug','Receptor','Complex'},'FontName',obj.FontName);
lh.Box = 'off';

% instantiate listener
dataListener = event.listener( model, 'DataChanged', ...
Expand Down
4 changes: 1 addition & 3 deletions code/LampView.m
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Expand Up @@ -9,9 +9,7 @@
LampColorFailure = [0.85, 0.33, 0.10] % color of lamp if RO not between thresholds after day 1
end

properties ( Hidden )
% Leave these properties Hidden but public to enable access for any test generated
% with Copilot during workshop
properties ( SetAccess=private, GetAccess={?tTMDDApp} )
LampObj
end

Expand Down
4 changes: 1 addition & 3 deletions code/NCAView.m
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Expand Up @@ -7,9 +7,7 @@

end

properties ( Hidden )
% Leave these properties Hidden but public to enable access for any test generated
% with Copilot during workshop
properties ( SetAccess=private, GetAccess={?tTMDDApp} )
NCAtable
end

Expand Down
11 changes: 4 additions & 7 deletions code/ROTimecourseView.m
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Expand Up @@ -8,10 +8,7 @@
'FontWeight','bold','LabelVerticalAlignment','middle'}; % style for threshold lines
end

properties ( Hidden, SetAccess=private)
% Leave these properties Hidden but public to enable access for any test generated
% with Copilot during workshop

properties ( GetAccess = {?tTMDDApp} )
% line handles
lhRO
end
Expand Down Expand Up @@ -42,12 +39,12 @@
ylabel(ax, "RO (%)",'FontName',obj.FontName);

obj.lhRO = plot(ax, NaN, NaN, 'Color', obj.ROColors,'Linewidth',2);
% yline(ax,model.ThresholdValues(1), '--','efficacy','FontName',obj.FontName,obj.ThresholdStyle{:});
% yline(ax,model.ThresholdValues(2), '--','safety','FontName',obj.FontName,obj.ThresholdStyle{:});
yline(ax,model.ThresholdValues(1), '--','efficacy','FontName',obj.FontName,obj.ThresholdStyle{:});
yline(ax,model.ThresholdValues(2), '--','safety','FontName',obj.FontName,obj.ThresholdStyle{:});


% set limits
ax.XLimitMethod = "padded";
xlim(ax,'auto');
ylim(ax,[-5, 105]);

% instantiate listener
Expand Down
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